(NEW!) Training materials for the workshop are available here
HIGHLIGHTS
All EUAsiaGrid participants are invited to attend
Bus provided to transfer participants from CloudAsia 2010 to NUS for late morning start of workshop at computer lab
"Towards a Global Computational Infrastructure for eScience"
Professor Simon Lin, Director,
Supercomputing Center, Academia Sinica, Taiwan.
| Tuesday 4 May 2010 | ||
| 8.30am-10.30am | CloudAsia 2010 Opening Ceremony at Singapore Management University | |
| 10.30am-11.30am |
Arrive at NUS workshop venue, Dept of Physics |
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Opening Session
Session Chair: Dr Asif Khan | ||
| 11.30am-12pm |
Keynote Speaker: Professor Ludek Matyska: EUAsiaGrid: a standard computational platform for eScience Powerpoint Presentation |
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| 12pm-12.30pm |
Biomedical Applications of Grid Computing Powerpoint Presentation |
|
| 12.30pm-1.30pm | Lunch | |
| Workshop Session I | ||
| 1.30pm-2.15pm |
Keynote Speaker: Professor Marco Fargetta: Core Technology of World Wide Grid and gLITE MiddleWare Link to presentation ppt |
|
| 2.15pm-4pm |
Discussion and Hands-on session Session Chairs: Professors Marco Fargetta & Giuseppe La Rocca All training materials here |
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| 4pm-4.30pm | Tea Break | |
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Workshop Session II: Discussion and Hands-on session
Session Chairs: Professors Marco Fargetta & Giuseppe La Rocca | ||
| 4.30pm-6.30pm |
Core concepts and technology on gLite middleware -
security, job management, data management and grid
information system http://www.euasiagrid.org/wiki/index.php/Training_materials_and_other_resources |
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| Wednesday 5 May 2010 | ||
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Workshop Session III: Application Porting and Grid Integration
Session Chairs: Professors Simon Lin & Tan Tin Wee | ||
| 9.30am-10.30am |
1. Grid enabling phylogenetic inference a) of HIV sequences (Hu Yongli, NUS) HIV.ppt b) of dengue and other flavivirus sequences (Chanditha Hapuarachchi, NEA Singapore) NEA.ppt |
|
| 10.30am-11am |
2. Grid enabling parameter sweep for SVM parameter
optimization of caspase cleavage sites prediction
(Lawrence Wee, I2R, Singapore)
SVM.ppt |
|
| 11.00am-12.30pm |
4. Grid enabling genome search a) to identify T3SS effectors (Sun Guang Wen, NUS) T3Effectors.ppt |
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| 12.30pm-1.30pm | Lunch | |
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Workshop Session IV: Application Porting and Grid Integration Session Chairs: Professors Simon Lin & Tan Tin Wee | ||
| 1.30pm-2pm |
5. Grid Enabling AutoDock Ligand-Receptor Docking a. for HLA-ligand complexes (Lam Tze Hau) autodock.ppt b. and Gromacs (Heru Suhartanto, Univ of Indonesia) gromacs.ppt | |
| 2pm-4pm | Discussion Session | |
| 4pm-4.30pm | Tea Break | |
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Workshop Session V: Discussion Session Session Chairs: Professors Simon Lin & Tan Tin Wee | ||
| 4.30pm-6.30pm |
Examples from EUAsiaGrid: Drug discovery/GVSS Virtual Screening on Avian Flu and Dengue Fever, WISDOM (Wide In Silico Docking on Malaria) 1. Grid Application Platform, TWGrid: http://gap.grid.sinica.edu.tw/ |
|
| 6.30pm-7pm |
Arrive at Kent Ridge Guild House (by internal shuttle bus) |
|
| 7pm-9.30pm |
AMBIS AGM/Dinner and Annual Lecture Professor Simon Lin: Towards a Global Computational Infrastructure for eScience Presentation PPT Huge 10Mbytes! |
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| Thursday 6 May 2010 | ||
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Workshop Session VI: Sharing and Discussion Session | ||
| 9am-11.30am |
Application porting technology, tools, and methodologies to gLite |
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| 11.30am-12.30pm |
Invited Speaker: Simone Brunozzi: Grids or clouds? Presentation PPT |
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| 12.30pm-1.30pm | Lunch | |
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Workshop Session VII | ||
| 1.30pm-2.45pm |
Practical Parallel Computing in R
Xie Chao and Tan Tin Wee, National University of Singapore Tutorial Notes on parallelR Tutorial Slides on parallelR Brief Introduction to R for Beginners |
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Workshop Session VIII | ||
| 2.45pm-4pm |
Cloud Computing with BioSlax and NUS BioCloud Mark De Silva, Lim Kuan Siong and Tan Tin Wee, National University of Singapore Tutorial materials |
|
| 4pm-4.30pm | Tea Break | |
| 4.30pm-5pm | Demonstration and Reports on Application Porting | |
| 5pm | Closing Ceremony | |